The CompMicroLab @ UmU

Making sense of microbial (meta)genomic data since 2023 🧬

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news

Sep 11, 2025 All (secretion) systems go! The Sismis preprint is out! 🦇
Sep 10, 2025 Battle bugs! The Friend or Foe dataset preprint is out! 🥊
Jul 18, 2025 Ciao, Milano! Two CompMicroLab members present at FEMS MICRO 2025! 🇮🇹
Jul 14, 2025 Calling all ANImaniacs! PyOrthoANI, PyFastANI, & Pyskani published in NAR Genomics and Bioinformatics! 🐍
Jun 23, 2025 All the single cells! Our single-cell metagenomic methods preprint is out! 🫧

selected publications

  1. Scalable and interpretable secretion system annotation with Sismis
    Martin Larralde, Florian Albrecht, Josefin Blom, and 2 more authors
    bioRxiv, 2025
  2. Friend or Foe
    Oleksandr Cherendichenko, Josephine Solowiej-Wedderburn, Laura M. Carroll, and 1 more author
    arXiv, 2025
  3. PyOrthoANI, PyFastANI, and Pyskani: a suite of Python libraries for computation of average nucleotide identity
    Martin Larralde, Georg Zeller, and Laura M Carroll
    NAR Genomics and Bioinformatics, Jul 2025
  4. Scalable single-cell metagenomic analysis with Bascet and Zorn
    Hadrien Gourlé, Iryna Yakovenko, Jyoti Verma, and 9 more authors
    bioRxiv, Jul 2025
  5. Fast, flexible gene cluster family delineation with IGUA
    Martin Larralde, Josefin Blom, Hadrien Gourlé, and 2 more authors
    bioRxiv, Jul 2025
  6. Genomic surveillance of Salmonella enterica serotype Minnesota strains from Brazilian poultry products imported into South Africa
    Vishnu Raghuram, Thendo Mafuna, Vignesh Ramnath, and 5 more authors
    medRxiv, Jul 2025
  7. A community-curated, global atlas of Bacillus cereus sensu lato genomes for epidemiological surveillance
    Vignesh Ramnath, Martin Larralde, Pedro Menchik, and 14 more authors
    bioRxiv, Jul 2023